Collections of Datasets, Tools, Methods & Concepts, Journals, Conferences, Labs, Blogs, Brain Projects, and anything helpful for brain mapping studies and cognitive neuroscience/brain science/psychology learning.
Any suggestions and recommendations will be very appreciated!
Grants and Fellowships
- For Postdocs. Database created by JHU
- For Graduate Students. Database created by JHU
- For Early Career Researchers. Database created by JHU
- Euraxess
- Brain & Bheavior Research Foundation
- Grant Writing Workshop
Datasets
- Gene expression data for human brain by Allen Institute
- UK Biobank | Oxford Brain Imaging Genetics (BIG) Server | BIG40
- MALPEM_ADNI_data
- SFARI
- ABCD Brain Imaging Data Structure (BIDS) version
- dbGaP: e.g., Neurodevelopmental Genomics
- Amsterdam Open MRI Collection
- HELIX
- Canadian Dementia Imaging Protocol
- Atlas-based resource: Physiological Structural-Effective Connectivity Atlas | BALSA
- Preprocessed Connectomes Project | NRU Benzodiazepine Receptor (BZR) Atlas
- Data Sharing: OpenfMRI | OpenNeuro | DRYAD | INID/fcon1000 | CONP | openMorph | nilearn | DataLad | zenodo | figshare | Google Dataset Search | Preprocessed Connectome Data
- COGNOMICS
- FCON1000: ABIDE I | ABIDE II
- OASIS: OASIS
- COINS: Collaborative Informatics and Neuroimaging Suite
- Neurosynth: Neurosynth | Neurovault: Neurovault
- HCP: HCP | Young Adult HCP | Lifespan HCP | HCP Development | HCP Aging | Baby Connectome Project
- MultiBrain: multiBrain
- Midnight Scan Club
- MASSIVE
- Language: Calgary Preschool MRI Dataset | HCP | Mirrored brain organization
- BOLD5000
- Naturalistic Neuroimaging Database Link2
- ALSPAC: Avon Longitudinal Study of Parents and Children
- MSigDB Collections
- Maelstrom
- GWAS summary statistics: Social Science Genetic Association Consortium (SSGAC) | PGC | UK Biobank GWAS from Neale Lab | GWAS Catalog | CTGLAB | GWAS ATLAS
- Genetics of Stuttering Study
- GenLang
- MyGene2
Naturalistic Data Analysis
- Naturalistic Data Analysis
- DartBrains
- Human Connectome Project 7T movie-watching data
- Child Mind Institute Health Brain Network project
- Sherlock Movie Watching Dataset
Artifical Neural Network
- Gym github link
- SyntaxGym
- neurogym
- PsychRNN
- DeepMind Lab LabMaze link
- pycolab
- deepmind
- Chainer: A deep learning framework | website
- DNNBrain
Brain Imaging Genomics
- Genetics: GeneNetwork | Ricopili | LocusZoom | ANNONAR | wANNOVAR
- GWAS: GWAS cookbook | MAGMA | mach2qtl | qctool | SNPTEST | ENIGMAprotocol | Michigan Imputation Server | GWAS Atlas | INRICH | MiXeR | MTAG
- Gene Ontology Enrichment Analysis: DAVID | GSEA | CTD | WebGestalt | GATHER | Enrichr | GOrilla
- RNA-seq: edgeR | MATS | MISO
- Genetic overlap: iSECA: (independent) SNP Effect Concordance Analysis | GENe OVerlap Analysis (GENOVA)
- 1000 Genomes data in Ensembl
- TWAS Hub
Online Testing
Other Tools
- fMRIprep | XCP | BIDS
- Nipype: Neuroimaging in Python.
- Nilearn: Machine learning for Neuro-Imaging in Python
- NeuroVault: A public repository of unthresholded statistical maps, parcellations, and atlases of the human brain.
- NeuroSynth: a platform for large-scale, automated synthesis of functional magnetic resonance imaging (fMRI) data.
- OpenfMRI: a project dedicated to the free and open sharing of raw magnetic resonance imaging (MRI) datasets.
- Mindboggle
- Anaconda: the leading open data science platform powered by Python.
- GitHub: Configuring a remote for a fork | Syncing a fork
- Coding
- Comparing two correlations: Site1 | Site2 | com2dcorr
- Naming: acronymify
- Visualization: Projector.Tensorflow | RAWGraphs | SANDDANCE | CART: Location | Vizualism.nl | Wordle | worldcloud | Connected Papers
- Python Tools: numexpr: Fast numerical expression evaluator for NumPy | Mlxtend | Slowest particle simulator on earth | neuropredict | ABCD_ML | researchpy |PyNets
- R Tools: feather: Read and write feather files, a lightweight binary columnar data store designed for maximum speed |
- Layer fMRI: LAYNII
- PyDeface
- Text processing: Texthero
- rsync
- Sphinx theme
- Meta Analysis: metafor | Graphical Display of Study Heterogeneity
- Multi-site: CovBat_Harmonization | ComBatHarmonization | ComBat for ENIGMA
- MALPEM: Multi-Atlas Label Propagation with Expecation-Maximisation
- Gradients: GradientDispersion
Network Analysis
Brain Atlas and Template
- Freesurfer cortical parcellation
- Glasser_et_al_2016_HCP
- Coordinate systems
- Pediatric templates: NIHPD
- MIITRA atlas, 65-95 years old
- Neurosynth Parcellation
- Shen et al. functional atlas with 268 regions, covering cortical, subcortical, and cerebellar regions
Brain Visualization
Courses, Methods & Concepts
- OHBM OnDeman
- d’ or Sensitivity Index
- Slice Timing
- Multimodal Integration
- The Brain Made Simple
- Applied Data Science with Python Specialization
- Statistics How To
- Univariate Distribution Relationships
- PYTHON FOR DATA SCIENCE
Books
- Innate: How the Wiring of Our Brains Shapes Who We Are
- I Am a Strange Loop
- Interpretable Machine Learning: A Guide for Making Black Box Models Explainable
Talk Series, Videos, Podcasts
- YouTube Channels: UCTV | BrainMap Seminar Series
- Could We Soon Augment Our Brains? Deblina Sarkar Link
- Biomedical & Life Sciences Lectures by leading world experts
- the Neuro
- 大脑好好玩
- 锵锵脑科学
- Artificial Intelligence: AI Podcast
- Open data resources (and how to download them)
- Nilearn Dev Days: Science and Software
Journals
- Cerebral Cortex: Journal | Submission
- Brain Structure and Function: Journal | Submission
- Journal of Neuroscience Methods: Journal | Submission
- Progress in Neurobiology | Journal of Child Psychology and Psychiatry | Advanced Science
- Open & Free Journals: The Journal of Open Source Software | ReScience C
| ReScience X
Conferences
Labs & Centers
- Poldrack Lab at Stanford University
- Brain Activity Atlas at Beijing Normal University
- Doeller Lab at the Donders Institute for Brain, Cognition and Behaviour.
- Computational Perception & Cognition
- bioinfo
- Complex Trait Genetics Lab
- Behavioral Research And Imaging Neurogenetics
- Cognitive Neurogenetics Link 2
- Brain-Gene-Development Lab
- Prof. Dr. Guy Vingerhoets
- Linial Lab
- Lloyd T. Elliott
- Holmes Lab
- TSAI LABORATORY AT MIT
- The Cognitive Biology of Language Group
- Qian Wu
- Basque Center on Cognition, Brain and Language
Blogs and Websites
- Multiple Comparisons by Chris Gorgolewski
- alivelearn by Xu Cui
- Xin Di
- ROEL WILLEMS
- basic statistics
- MVPA Meanderings
- BRAIN STUFF
- Kong Brain Observatory
- layer fMRI blog
- BBC Sounds
- neurostars
- The Brain Blog
- neuroplausible
- dsquintana.blog
- E-Books & Full Text: Library Genesis | Sci-Hub | Z-Library | The Pirate Bay
- Behavioral Models
- CANLAB (+) NEUROIMAGING PATTERNS AND SIGNATURES
- MPI TalkLing
Brain Projects
- Human Brain Project
- BRAIN Initiative
- Human Connectome Project
- Japan Brain/MINDS Project
- China Brain Project
Life in the Netherlands
- Max Planck Institute: Home | VPN | Email | OwnCloud | Library Catalog | ReNA | Free OA Journals | RemoteDesktop | languagegenetics | ResearchProfessional
- Donders: De Refer weekly menu | Research Themes | Radboud Reflects | VOX
- Tax Return: belastingdienst | income statement
- Your ZIP Code
- tandarts查牙医
- Global Top ~100 Universities for Neuroscience and Behavior in the Netherlands: VU University Amsterdam | Radboud University Nijmegen | Utrecht University | Erasmus University Rotterdam | University of Amsterdam | Maastricht University | Leiden University | University of Groningen
- Shopping: Albert Heijn | JUMBO | allbeauty with DISCOUNT
- Travel-flight: KLM | Ryanair | GoEuro | skyscanner | GoogleFlights | KIWI | transavia | Lufthansa | cheapTickets | 携程
- Travel-train&bus: Netherlands: NS | Netherlands: international NS | GoogleMap | Swiden: SJ | FLiXBUS | Germany: DB | Missed check in/out OV card?
- Housing/Hotel: Hestia | Booking with DISCOUNT | Airbnb with DISCOUNT | Airbnb with DISCOUNT
- Banking: 中国银行国内机构SWIFT代码
- Other: Safefy | Bike Missing? | Groupon
Life in Hangzhou
- Internet: GWDG vpn
- ZJU办公
- JZU网络: 信息技术中心 | 浙大邮箱 | 网络服务自助中心 | 各校区地址邮编 | 浙大云计算 | 校内网测速 | 公网测速 | 校园正版化软件平台
- ZJU链接：数据科学研究中心 | 心理系实验预约
- ZJU列表：基金申请专栏 | 报奖专栏 | 刊物级别
- 基金相关：国家科技管理信息系统公共服务平台 | 国家自然科学基金共享服务网
Other things
- Mac: 8个不可不知的Mac OS X专用命令行工具
- Travel Expenses Claim: Types of meals in the hotels
- English: Conversation audio